STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFS99144.1WD40-like Beta Propeller Repeat. (1013 aa)    
Predicted Functional Partners:
SFS99135.1
Protein of unknown function.
 
     0.955
SFS99129.1
ATPase family associated with various cellular activities (AAA).
 
     0.878
SFS99159.1
Hypothetical protein.
 
  
  0.867
SFS51089.1
Hypothetical protein.
  
 0.784
SFS66283.1
Peptidase_C39 like family protein.
  
 0.784
SFS86211.1
Outer membrane protein OmpA.
  
 0.784
SFS99121.1
Protein of unknown function.
 
     0.778
SFS99067.1
Conserved hypothetical phage tail region protein.
 
     0.775
SFS98969.1
Hypothetical protein.
  
     0.773
SFS99005.1
Zn-binding Pro-Ala-Ala-Arg (PAAR) domain-containing protein, incolved in TypeVI secretion.
 
     0.764
Your Current Organism:
Saccharopolyspora flava
NCBI taxonomy Id: 95161
Other names: DSM 44771, IFO 16345, JCM 10665, NBRC 16345, S. flava, Saccharopolyspora flava Lu et al. 2001, strain 07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.