STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDU85902.1Acid phosphatase; Partial gene; manually curated. (537 aa)    
Predicted Functional Partners:
SDU93151.1
Amino acid adenylation domain-containing protein.
 
   
 0.969
SDU93133.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
 
   
 0.946
SDU99745.1
NADP-dependent 3-hydroxy acid dehydrogenase YdfG; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
      0.895
SDV11661.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
 
   
 0.878
fabD
[Acyl-carrier-protein] S-malonyltransferase.
 
      0.870
SDU93159.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
 
   
 0.845
SDV14746.1
NADP-dependent 3-hydroxy acid dehydrogenase YdfG.
 
      0.819
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
 
      0.802
SDV17044.1
Undecaprenyl-diphosphatase.
    
 0.725
SDV10700.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
 
   
  0.650
Your Current Organism:
Pseudomonas vancouverensis
NCBI taxonomy Id: 95300
Other names: ATCC 700688, CCUG 49675, CIP 106707, P. vancouverensis, strain DhA-51
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