STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
algLpoly(beta-D-mannuronate) lyase; Catalyzes the depolymerization of alginate by cleaving the beta-1,4 glycosidic bond between two adjacent sugar residues via a beta-elimination mechanism; Belongs to the polysaccharide lyase 5 family. (374 aa)    
Predicted Functional Partners:
SDU87106.1
poly(beta-D-mannuronate) C5 epimerase.
 
 
 0.996
SDU87098.1
Alginate biosynthesis protein AlgX.
 
  
 0.990
SDU87122.1
Alginate biosynthesis protein AlgK.
 
  
 0.985
SDU87141.1
Glycosyltransferase Alg8.
 
  
 0.981
SDU87070.1
Alginate O-acetyltransferase complex protein AlgJ.
 
  
 0.957
SDU87114.1
Alginate export porin.
  
  
 0.945
SDU87130.1
Alginate biosynthesis protein Alg44.
  
  
 0.940
SDV15320.1
Subtilase family protein.
  
 
 0.885
SDU98795.1
Hypothetical protein.
 
 0.883
SDU87078.1
Alginate O-acetyltransferase complex protein AlgI; Belongs to the membrane-bound acyltransferase family.
 
  
 0.856
Your Current Organism:
Pseudomonas vancouverensis
NCBI taxonomy Id: 95300
Other names: ATCC 700688, CCUG 49675, CIP 106707, P. vancouverensis, strain DhA-51
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