STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDU87342.1Ketosteroid isomerase-related protein. (156 aa)    
Predicted Functional Partners:
SDU87352.1
Putative endonuclease.
       0.695
SDU87322.1
Transcriptional regulator, GntR family.
       0.598
SDU87333.1
MFS transporter, CP family, cyanate transporter.
       0.598
SDU87361.1
Glutathione S-transferase.
  
    0.543
pdxH
Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
  
 
 0.535
SDV13858.1
Phenazine biosynthesis protein PhzF family.
  
 
  0.526
SDV16138.1
Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily.
  
     0.517
SDV13478.1
Ketosteroid isomerase homolog.
 
  
 0.431
SDV10367.1
Hypothetical protein.
 
     0.426
SDU88098.1
Uncharacterized membrane protein YhhN.
  
     0.412
Your Current Organism:
Pseudomonas vancouverensis
NCBI taxonomy Id: 95300
Other names: ATCC 700688, CCUG 49675, CIP 106707, P. vancouverensis, strain DhA-51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.