STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDU89669.1Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (292 aa)    
Predicted Functional Partners:
SDV17313.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.709
SDV13751.1
Transcriptional regulator, LysR family; Manually curated; Belongs to the LysR transcriptional regulatory family.
  
     0.696
SDV15810.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.691
SDV00213.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.628
SDU94423.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.619
SDU89651.1
Heme-degrading monooxygenase HmoA.
       0.573
SDU89661.1
Glutamine amidotransferase class-I.
       0.563
SDV06661.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.487
SDU86046.1
LysR family transcriptional regulator, glycine cleavage system transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.441
SDV06723.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.441
Your Current Organism:
Pseudomonas vancouverensis
NCBI taxonomy Id: 95300
Other names: ATCC 700688, CCUG 49675, CIP 106707, P. vancouverensis, strain DhA-51
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