STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDU90418.1Two-component system, OmpR family, sensor histidine kinase PfeS. (473 aa)    
Predicted Functional Partners:
SDU90407.1
Two-component system, OmpR family, response regulator PfeR.
 
 0.986
SDU90400.1
Multi-sensor hybrid histidine kinase.
 
 
 0.950
SDV03709.1
Signal transduction histidine kinase.
 
0.944
SDV11858.1
Multi-sensor hybrid histidine kinase.
 
 
 0.939
SDV10940.1
Two-component system, NarL family, sensor histidine kinase EvgS.
 
 
 0.934
SDV05018.1
Signal transduction histidine kinase.
 
 
 0.910
SDV00604.1
Hypothetical protein.
 
 
 0.894
SDV01052.1
PAS/PAC sensor hybrid histidine kinase.
 
 
 0.881
SDU99813.1
Multi-sensor hybrid histidine kinase.
 
 
0.874
SDV12750.1
Two component transcriptional regulator, winged helix family.
 
 0.874
Your Current Organism:
Pseudomonas vancouverensis
NCBI taxonomy Id: 95300
Other names: ATCC 700688, CCUG 49675, CIP 106707, P. vancouverensis, strain DhA-51
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