peaB protein (Pseudomonas vancouverensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

peaB

Uncharacterized protein. (476 aa)

Predicted Functional Partners:

SDU92995.1

0.954

peaD

0.929

peaA

0.910

betC

0.812

SDV08341.1

0.811

SDU99554.1

0.794

SDV04899.1

0.794

SDV05549.1

0.794

SDV15426.1

0.794

SDV15469.1

0.794

Your Current Organism:

Pseudomonas vancouverensis

NCBI taxonomy Id: 95300
Other names: ATCC 700688, CCUG 49675, CIP 106707, P. vancouverensis, strain DhA-51

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDU92995.1	peaA	SAMN05216558_0819	SAMN05216558_0817	Quinohemoprotein amine dehydrogenase, gamma subunit.	Quinohemoprotein amine dehydrogenase, alpha subunit.	0.997
SDU92995.1	peaB	SAMN05216558_0819	SAMN05216558_0818	Quinohemoprotein amine dehydrogenase, gamma subunit.	Uncharacterized protein.	0.954
SDU92995.1	peaD	SAMN05216558_0819	SAMN05216558_0820	Quinohemoprotein amine dehydrogenase, gamma subunit.	Quinohemoprotein amine dehydrogenase, beta subunit.	0.994
SDU99554.1	peaB	SAMN05216558_1609	SAMN05216558_0818	Arylsulfatase.	Uncharacterized protein.	0.794
SDV04899.1	peaB	SAMN05216558_2281	SAMN05216558_0818	Arylsulfatase.	Uncharacterized protein.	0.794
SDV05549.1	peaB	SAMN05216558_2391	SAMN05216558_0818	Arylsulfatase.	Uncharacterized protein.	0.794
SDV08341.1	peaB	SAMN05216558_2875	SAMN05216558_0818	Arylsulfatase.	Uncharacterized protein.	0.811
SDV15426.1	peaB	SAMN05216558_4945	SAMN05216558_0818	Arylsulfatase.	Uncharacterized protein.	0.794
SDV15469.1	peaB	SAMN05216558_4969	SAMN05216558_0818	Arylsulfatase.	Uncharacterized protein.	0.794
betC	peaB	SAMN05216558_5098	SAMN05216558_0818	Choline-sulfatase.	Uncharacterized protein.	0.812
peaA	SDU92995.1	SAMN05216558_0817	SAMN05216558_0819	Quinohemoprotein amine dehydrogenase, alpha subunit.	Quinohemoprotein amine dehydrogenase, gamma subunit.	0.997
peaA	peaB	SAMN05216558_0817	SAMN05216558_0818	Quinohemoprotein amine dehydrogenase, alpha subunit.	Uncharacterized protein.	0.910
peaA	peaD	SAMN05216558_0817	SAMN05216558_0820	Quinohemoprotein amine dehydrogenase, alpha subunit.	Quinohemoprotein amine dehydrogenase, beta subunit.	0.999
peaB	SDU92995.1	SAMN05216558_0818	SAMN05216558_0819	Uncharacterized protein.	Quinohemoprotein amine dehydrogenase, gamma subunit.	0.954
peaB	SDU99554.1	SAMN05216558_0818	SAMN05216558_1609	Uncharacterized protein.	Arylsulfatase.	0.794
peaB	SDV04899.1	SAMN05216558_0818	SAMN05216558_2281	Uncharacterized protein.	Arylsulfatase.	0.794
peaB	SDV05549.1	SAMN05216558_0818	SAMN05216558_2391	Uncharacterized protein.	Arylsulfatase.	0.794
peaB	SDV08341.1	SAMN05216558_0818	SAMN05216558_2875	Uncharacterized protein.	Arylsulfatase.	0.811
peaB	SDV15426.1	SAMN05216558_0818	SAMN05216558_4945	Uncharacterized protein.	Arylsulfatase.	0.794
peaB	SDV15469.1	SAMN05216558_0818	SAMN05216558_4969	Uncharacterized protein.	Arylsulfatase.	0.794