STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDU95763.1Carboxymethylenebutenolidase. (410 aa)    
Predicted Functional Partners:
catA
Catechol 1,2-dioxygenase.
  
 
 0.807
antC
Anthranilate 1,2-dioxygenase reductase subunit.
 
   0.785
SDU93151.1
Amino acid adenylation domain-containing protein.
  
 
 0.758
SDU95789.1
3-phenylpropionate/cinnamic acid dioxygenase, small subunit.
 
    0.740
SDU95798.1
Phenylpropionate dioxygenase, large terminal subunit.
 
    0.733
SDU95772.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
    0.696
SDU95781.1
Nicotinamidase-related amidase.
  
    0.688
SDU98171.1
Muconate cycloisomerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
 
 0.685
SDU95807.1
Vanillate O-demethylase ferredoxin subunit.
  
  
 0.668
catC
Muconolactone delta-isomerase.
   
  
 0.653
Your Current Organism:
Pseudomonas vancouverensis
NCBI taxonomy Id: 95300
Other names: ATCC 700688, CCUG 49675, CIP 106707, P. vancouverensis, strain DhA-51
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