Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDU89228.1 | SDV00513.1 | SAMN05216558_0357 | SAMN05216558_1724 | DNA polymerase III, alpha subunit. | Protein ImuB. | 0.593 |
SDU89228.1 | SDV09960.1 | SAMN05216558_0357 | SAMN05216558_3159 | DNA polymerase III, alpha subunit. | DNA polymerase V. | 0.541 |
SDU89228.1 | dinB | SAMN05216558_0357 | SAMN05216558_3927 | DNA polymerase III, alpha subunit. | DNA polymerase-4; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.541 |
SDU89228.1 | imuA | SAMN05216558_0357 | SAMN05216558_1723 | DNA polymerase III, alpha subunit. | Hypothetical protein. | 0.568 |
SDU89228.1 | recA | SAMN05216558_0357 | SAMN05216558_0380 | DNA polymerase III, alpha subunit. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.455 |
SDV00513.1 | SDU89228.1 | SAMN05216558_1724 | SAMN05216558_0357 | Protein ImuB. | DNA polymerase III, alpha subunit. | 0.593 |
SDV00513.1 | dnaE2 | SAMN05216558_1724 | SAMN05216558_1725 | Protein ImuB. | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | 0.977 |
SDV00513.1 | imuA | SAMN05216558_1724 | SAMN05216558_1723 | Protein ImuB. | Hypothetical protein. | 0.996 |
SDV00513.1 | lexA | SAMN05216558_1724 | SAMN05216558_1107 | Protein ImuB. | SOS-response transcriptional repressor, LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.816 |
SDV00513.1 | lexA-2 | SAMN05216558_1724 | SAMN05216558_1722 | Protein ImuB. | SOS-response transcriptional repressor, LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.955 |
SDV00513.1 | recA | SAMN05216558_1724 | SAMN05216558_0380 | Protein ImuB. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.916 |
SDV00513.1 | recN | SAMN05216558_1724 | SAMN05216558_4398 | Protein ImuB. | DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.427 |
SDV00513.1 | topB | SAMN05216558_1724 | SAMN05216558_1721 | Protein ImuB. | DNA topoisomerase-3. | 0.738 |
SDV09960.1 | SDU89228.1 | SAMN05216558_3159 | SAMN05216558_0357 | DNA polymerase V. | DNA polymerase III, alpha subunit. | 0.541 |
SDV09960.1 | dnaE2 | SAMN05216558_3159 | SAMN05216558_1725 | DNA polymerase V. | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | 0.541 |
SDV09960.1 | imuA | SAMN05216558_3159 | SAMN05216558_1723 | DNA polymerase V. | Hypothetical protein. | 0.821 |
SDV09960.1 | lexA | SAMN05216558_3159 | SAMN05216558_1107 | DNA polymerase V. | SOS-response transcriptional repressor, LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.840 |
SDV09960.1 | lexA-2 | SAMN05216558_3159 | SAMN05216558_1722 | DNA polymerase V. | SOS-response transcriptional repressor, LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.851 |
SDV09960.1 | recA | SAMN05216558_3159 | SAMN05216558_0380 | DNA polymerase V. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.914 |
SDV09960.1 | recN | SAMN05216558_3159 | SAMN05216558_4398 | DNA polymerase V. | DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.474 |
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