STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ahpFAlkyl hydroperoxide reductase subunit F. (520 aa)    
Predicted Functional Partners:
ahpC
Peroxiredoxin (alkyl hydroperoxide reductase subunit C); Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
 
  
 0.993
SDV13842.1
Peroxiredoxin (alkyl hydroperoxide reductase subunit C).
 
  
 0.898
SDV07964.1
1-Cys peroxiredoxin.
  
  
 0.804
SDV16217.1
1-Cys peroxiredoxin.
  
  
 0.804
SDV13643.1
Starvation-inducible DNA-binding protein; Belongs to the Dps family.
 
  
 0.744
preA
Dihydroorotate oxidase B, catalytic subunit.
     
 0.712
SDV15975.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
   
 0.672
SDV14187.1
Superoxide dismutase, Fe-Mn family; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
  
 0.668
trxB
Thioredoxin reductase (NADPH).
  
 
 0.667
trxB-2
Thioredoxin reductase (NADPH).
  
 
 0.667
Your Current Organism:
Pseudomonas vancouverensis
NCBI taxonomy Id: 95300
Other names: ATCC 700688, CCUG 49675, CIP 106707, P. vancouverensis, strain DhA-51
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