STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDV04208.1Imipenem/basic amino acid-specific outer membrane pore. (426 aa)    
Predicted Functional Partners:
SDV04200.1
Imidazolonepropionase.
       0.651
SDV03988.1
Outer membrane porin, OprD family.
  
  
 
0.623
SDV14908.1
N-acetylglucosaminyl deacetylase, LmbE family.
  
     0.548
SDV15566.1
Nickel/cobalt transporter regulator.
  
     0.538
SDV04214.1
Catechol 2,3-dioxygenase.
       0.488
SDV11178.1
Hypothetical protein.
  
     0.472
SDU90589.1
Protein of unknown function.
  
     0.470
SDV14248.1
Predicted secreted protein.
  
     0.469
SDU91437.1
Regulatory protein, luxR family.
  
     0.468
SDU94590.1
Mechanosensitive ion channel.
  
     0.450
Your Current Organism:
Pseudomonas vancouverensis
NCBI taxonomy Id: 95300
Other names: ATCC 700688, CCUG 49675, CIP 106707, P. vancouverensis, strain DhA-51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.