STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDV04292.1Zn-binding Pro-Ala-Ala-Arg (PAAR) domain-containing protein, incolved in TypeVI secretion. (489 aa)    
Predicted Functional Partners:
SDV04270.1
Hypothetical protein.
       0.773
SDV04277.1
Hypothetical protein.
      
0.773
SDV04286.1
Hypothetical protein.
       0.773
tuf
Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
    
   0.644
SDU93225.1
Outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid.
    
   0.631
SDV02040.1
Outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid.
    
   0.631
SDV07673.1
Iron complex outermembrane recepter protein.
    
   0.631
SDV14057.1
Iron complex outermembrane recepter protein.
    
   0.631
SDV16634.1
Iron complex outermembrane recepter protein.
    
   0.631
Your Current Organism:
Pseudomonas vancouverensis
NCBI taxonomy Id: 95300
Other names: ATCC 700688, CCUG 49675, CIP 106707, P. vancouverensis, strain DhA-51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.