STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDV07135.1DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (290 aa)    
Predicted Functional Partners:
SDU93710.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.690
SDU98458.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.681
SDV07482.1
LysR family transcriptional regulator, glycine cleavage system transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.672
SDV16064.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.672
SDV06050.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.661
SDV02065.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.658
SDV06811.1
LysR family transcriptional regulator, regulator for metE and metH; Belongs to the LysR transcriptional regulatory family.
  
     0.632
SDV06155.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.598
SDV16688.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.587
SDV13005.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.582
Your Current Organism:
Pseudomonas vancouverensis
NCBI taxonomy Id: 95300
Other names: ATCC 700688, CCUG 49675, CIP 106707, P. vancouverensis, strain DhA-51
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