STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDV07738.1AraC-type DNA-binding protein. (328 aa)    
Predicted Functional Partners:
SDV15048.1
Glutamate synthase (NADPH) large subunit.
    
  0.690
SDU99936.1
Transcriptional regulator, AraC family.
  
     0.637
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.630
SDV07745.1
Acetyltransferase (GNAT) family protein.
       0.551
SDV10023.1
Transcriptional regulator, TetR family.
  
     0.551
SDV07091.1
Transcriptional regulator, AraC family.
  
     0.550
ftrA
Transcriptional regulator, AraC family with amidase-like domain.
  
   0.527
SDV16912.1
Transcriptional regulator, AraC family with amidase-like domain.
  
   0.521
SDV07726.1
Methyltransferase domain-containing protein.
 
     0.515
SDU91235.1
Helix-turn-helix domain-containing protein.
  
    0.512
Your Current Organism:
Pseudomonas vancouverensis
NCBI taxonomy Id: 95300
Other names: ATCC 700688, CCUG 49675, CIP 106707, P. vancouverensis, strain DhA-51
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