Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDU91235.1 | SDV07738.1 | SAMN05216558_0597 | SAMN05216558_2770 | Helix-turn-helix domain-containing protein. | AraC-type DNA-binding protein. | 0.512 |
SDU99936.1 | SDV07738.1 | SAMN05216558_1654 | SAMN05216558_2770 | Transcriptional regulator, AraC family. | AraC-type DNA-binding protein. | 0.637 |
SDU99936.1 | SDV15048.1 | SAMN05216558_1654 | SAMN05216558_4751 | Transcriptional regulator, AraC family. | Glutamate synthase (NADPH) large subunit. | 0.690 |
SDU99936.1 | rpoA | SAMN05216558_1654 | SAMN05216558_5713 | Transcriptional regulator, AraC family. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.630 |
SDV07091.1 | SDV07738.1 | SAMN05216558_2659 | SAMN05216558_2770 | Transcriptional regulator, AraC family. | AraC-type DNA-binding protein. | 0.550 |
SDV07091.1 | SDV15048.1 | SAMN05216558_2659 | SAMN05216558_4751 | Transcriptional regulator, AraC family. | Glutamate synthase (NADPH) large subunit. | 0.690 |
SDV07091.1 | rpoA | SAMN05216558_2659 | SAMN05216558_5713 | Transcriptional regulator, AraC family. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.630 |
SDV07726.1 | SDV07738.1 | SAMN05216558_2768 | SAMN05216558_2770 | Methyltransferase domain-containing protein. | AraC-type DNA-binding protein. | 0.515 |
SDV07738.1 | SDU91235.1 | SAMN05216558_2770 | SAMN05216558_0597 | AraC-type DNA-binding protein. | Helix-turn-helix domain-containing protein. | 0.512 |
SDV07738.1 | SDU99936.1 | SAMN05216558_2770 | SAMN05216558_1654 | AraC-type DNA-binding protein. | Transcriptional regulator, AraC family. | 0.637 |
SDV07738.1 | SDV07091.1 | SAMN05216558_2770 | SAMN05216558_2659 | AraC-type DNA-binding protein. | Transcriptional regulator, AraC family. | 0.550 |
SDV07738.1 | SDV07726.1 | SAMN05216558_2770 | SAMN05216558_2768 | AraC-type DNA-binding protein. | Methyltransferase domain-containing protein. | 0.515 |
SDV07738.1 | SDV07745.1 | SAMN05216558_2770 | SAMN05216558_2771 | AraC-type DNA-binding protein. | Acetyltransferase (GNAT) family protein. | 0.551 |
SDV07738.1 | SDV10023.1 | SAMN05216558_2770 | SAMN05216558_3170 | AraC-type DNA-binding protein. | Transcriptional regulator, TetR family. | 0.551 |
SDV07738.1 | SDV15048.1 | SAMN05216558_2770 | SAMN05216558_4751 | AraC-type DNA-binding protein. | Glutamate synthase (NADPH) large subunit. | 0.690 |
SDV07738.1 | SDV16912.1 | SAMN05216558_2770 | SAMN05216558_5721 | AraC-type DNA-binding protein. | Transcriptional regulator, AraC family with amidase-like domain. | 0.521 |
SDV07738.1 | ftrA | SAMN05216558_2770 | SAMN05216558_1564 | AraC-type DNA-binding protein. | Transcriptional regulator, AraC family with amidase-like domain. | 0.527 |
SDV07738.1 | rpoA | SAMN05216558_2770 | SAMN05216558_5713 | AraC-type DNA-binding protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.630 |
SDV07745.1 | SDV07738.1 | SAMN05216558_2771 | SAMN05216558_2770 | Acetyltransferase (GNAT) family protein. | AraC-type DNA-binding protein. | 0.551 |
SDV07745.1 | SDV15048.1 | SAMN05216558_2771 | SAMN05216558_4751 | Acetyltransferase (GNAT) family protein. | Glutamate synthase (NADPH) large subunit. | 0.704 |
page 1 of 2