STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDV08398.1Carbonic anhydrase. (179 aa)    
Predicted Functional Partners:
cynS
Cyanate lyase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family.
  
 
 0.827
SDU87976.1
Carbonic anhydrase or acetyltransferase, isoleucine patch superfamily.
    
 0.772
paaY
Phenylacetic acid degradation protein.
    
 0.772
SDV12587.1
Sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family.
    
 0.772
SDV15683.1
Carbonic anhydrase or acetyltransferase, isoleucine patch superfamily.
    
 0.772
SDV15844.1
Carbonic anhydrase or acetyltransferase, isoleucine patch superfamily.
    
 0.772
SDV16477.1
Formate/nitrite transporter FocA, FNT family.
  
    0.683
SDV14461.1
Sulfate permease, SulP family.
  
 
 0.630
SDV08391.1
Transcriptional regulator, MarR family with acetyltransferase activity; Manually curated.
    
  0.530
SDV08404.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.520
Your Current Organism:
Pseudomonas vancouverensis
NCBI taxonomy Id: 95300
Other names: ATCC 700688, CCUG 49675, CIP 106707, P. vancouverensis, strain DhA-51
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