STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SDV09069.1Conserved hypothetical protein. (246 aa)    
Predicted Functional Partners:
SDV09075.1
Hypothetical protein.
 
     0.681
SDU99042.1
Phosphoethanolamine transferase for glucans (OPG), alkaline phosphatase superfamily.
  
     0.490
SDV16596.1
TraX protein.
  
     0.441
SDU98975.1
O-antigen ligase.
  
     0.438
SDU98907.1
Acetyltransferase (GNAT) domain-containing protein.
  
     0.408
SDU98992.1
Uncharacterized protein involved in exopolysaccharide biosynthesis.
  
     0.402
Your Current Organism:
Pseudomonas vancouverensis
NCBI taxonomy Id: 95300
Other names: ATCC 700688, CCUG 49675, CIP 106707, P. vancouverensis, strain DhA-51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.