STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDV09510.1Transcriptional regulator, MarR family. (157 aa)    
Predicted Functional Partners:
SDV09499.1
Membrane fusion protein, multidrug efflux system.
 
  
 0.821
SDV09504.1
Efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
  
  
 0.819
SDU87904.1
PTS N-acetyl-D-glucosamine transporter; PTS system N-acetylglucosamine-specific IIB component, Glc family /PTS system N-acetylglucosamine-specific IIC component, Glc family.
     
 0.744
SDV09494.1
MFS transporter, DHA2 family, multidrug resistance protein; Belongs to the major facilitator superfamily.
 
    0.543
ptsP
Phosphocarrier protein HPr.
   
 
 0.470
SDV10379.1
Transcriptional regulator, MarR family.
  
     0.454
SDV09517.1
Translocation and assembly module TamB.
       0.447
SDV09522.1
Autotransporter secretion outer membrane protein TamA; Manually curated.
       0.442
Your Current Organism:
Pseudomonas vancouverensis
NCBI taxonomy Id: 95300
Other names: ATCC 700688, CCUG 49675, CIP 106707, P. vancouverensis, strain DhA-51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.