Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SDV10222.1Protein of unknown function. (450 aa)    
Predicted Functional Partners:
SDV10229.1
Protein of unknown function.
 
    0.957
SDV10217.1
Uncharacterized protein.
 
  
 0.924
SDV10211.1
Hypothetical protein.
 
   
 0.875
SDU86520.1
Protein of unknown function.
 
    0.873
SDU91392.1
Protein of unknown function.
 
    0.873
SDU99666.1
Protein of unknown function.
 
    0.873
SDV04779.1
Protein of unknown function.
 
    0.873
SDV10269.1
Protein of unknown function.
 
    0.873
SDV10718.1
Protein of unknown function.
 
    0.873
SDV13932.1
Protein of unknown function.
 
    0.873
Your Current Organism:
Pseudomonas vancouverensis
NCBI taxonomy Id: 95300
Other names: ATCC 700688, CCUG 49675, CIP 106707, P. vancouverensis, strain DhA-51
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