STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDV14455.1Transcriptional regulator, RpiR family. (286 aa)    
Predicted Functional Partners:
SDV14453.1
N-acyl-D-amino-acid deacylase.
 
     0.912
SDU87904.1
PTS N-acetyl-D-glucosamine transporter; PTS system N-acetylglucosamine-specific IIB component, Glc family /PTS system N-acetylglucosamine-specific IIC component, Glc family.
 
 
 0.891
SDV14457.1
Gluconate permease GntT.
       0.752
SDV01028.1
D-serine deaminase, pyridoxal phosphate-dependent.
 
     0.724
SDV14459.1
Hypothetical protein.
       0.698
eda
2-keto-3-deoxy-phosphogluconate aldolase.
 
  
 0.691
SDV14461.1
Sulfate permease, SulP family.
       0.649
SDU91795.1
2-keto-3-deoxy-phosphogalactonate aldolase.
 
  
 0.615
nagA
N-acetylglucosamine 6-phosphate deacetylase.
 
   
 0.562
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
    
 0.555
Your Current Organism:
Pseudomonas vancouverensis
NCBI taxonomy Id: 95300
Other names: ATCC 700688, CCUG 49675, CIP 106707, P. vancouverensis, strain DhA-51
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