STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDV15064.1Type IV pilus assembly protein PilM. (350 aa)    
Predicted Functional Partners:
SDV15062.1
Type IV pilus assembly protein PilN.
 
 0.999
SDV15060.1
Type IV pilus assembly protein PilO.
 
 
 0.996
SDV15056.1
Type IV pilus assembly protein PilQ.
 
 
 0.995
SDV15058.1
Type IV pilus assembly protein PilP.
 
 
 0.994
SDV15728.1
Hypothetical protein.
  
 
   0.957
SDV17325.1
Type IV pilus assembly protein PilC.
 
 
 
 0.935
SDU97978.1
General secretion pathway protein D; Belongs to the bacterial secretin family.
  
 
 0.908
SDV16199.1
General secretion pathway protein E.
 
 
 
 0.893
gspF
General secretion pathway protein F.
 
 
 
 0.857
gspE
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 
 0.850
Your Current Organism:
Pseudomonas vancouverensis
NCBI taxonomy Id: 95300
Other names: ATCC 700688, CCUG 49675, CIP 106707, P. vancouverensis, strain DhA-51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.