Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDU86708.1 | SDV16070.1 | SAMN05216558_0089 | SAMN05216558_5277 | Stringent starvation protein B. | Hypothetical protein. | 0.474 |
SDU86708.1 | ftsB | SAMN05216558_0089 | SAMN05216558_0363 | Stringent starvation protein B. | Cell division protein FtsB; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. | 0.756 |
SDU86708.1 | ftsQ | SAMN05216558_0089 | SAMN05216558_0108 | Stringent starvation protein B. | Cell division protein FtsQ; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly. | 0.736 |
SDU86708.1 | lolB | SAMN05216558_0089 | SAMN05216558_0026 | Stringent starvation protein B. | Outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein. | 0.592 |
SDU86708.1 | lptD | SAMN05216558_0089 | SAMN05216558_5626 | Stringent starvation protein B. | LPS-assembly protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. | 0.564 |
SDU86708.1 | recO | SAMN05216558_0089 | SAMN05216558_0208 | Stringent starvation protein B. | DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.745 |
SDV15101.1 | SDV16070.1 | SAMN05216558_4778 | SAMN05216558_5277 | Ubiquinone biosynthesis protein UbiJ. | Hypothetical protein. | 0.639 |
SDV15101.1 | SDV16114.1 | SAMN05216558_4778 | SAMN05216558_5301 | Ubiquinone biosynthesis protein UbiJ. | HemY protein. | 0.427 |
SDV15101.1 | bioC | SAMN05216558_4778 | SAMN05216558_5583 | Ubiquinone biosynthesis protein UbiJ. | malonyl-CoA O-methyltransferase; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway. | 0.525 |
SDV15101.1 | ftsQ | SAMN05216558_4778 | SAMN05216558_0108 | Ubiquinone biosynthesis protein UbiJ. | Cell division protein FtsQ; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly. | 0.427 |
SDV15101.1 | lptD | SAMN05216558_4778 | SAMN05216558_5626 | Ubiquinone biosynthesis protein UbiJ. | LPS-assembly protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. | 0.677 |
SDV15101.1 | recO | SAMN05216558_4778 | SAMN05216558_0208 | Ubiquinone biosynthesis protein UbiJ. | DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.404 |
SDV16068.1 | SDV16070.1 | SAMN05216558_5276 | SAMN05216558_5277 | Magnesium chelatase family protein. | Hypothetical protein. | 0.516 |
SDV16070.1 | SDU86708.1 | SAMN05216558_5277 | SAMN05216558_0089 | Hypothetical protein. | Stringent starvation protein B. | 0.474 |
SDV16070.1 | SDV15101.1 | SAMN05216558_5277 | SAMN05216558_4778 | Hypothetical protein. | Ubiquinone biosynthesis protein UbiJ. | 0.639 |
SDV16070.1 | SDV16068.1 | SAMN05216558_5277 | SAMN05216558_5276 | Hypothetical protein. | Magnesium chelatase family protein. | 0.516 |
SDV16070.1 | SDV16114.1 | SAMN05216558_5277 | SAMN05216558_5301 | Hypothetical protein. | HemY protein. | 0.439 |
SDV16070.1 | bioC | SAMN05216558_5277 | SAMN05216558_5583 | Hypothetical protein. | malonyl-CoA O-methyltransferase; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway. | 0.429 |
SDV16070.1 | ftsB | SAMN05216558_5277 | SAMN05216558_0363 | Hypothetical protein. | Cell division protein FtsB; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. | 0.458 |
SDV16070.1 | ftsQ | SAMN05216558_5277 | SAMN05216558_0108 | Hypothetical protein. | Cell division protein FtsQ; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly. | 0.504 |
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