Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SHROOM4Shroom family member 4. (1497 aa)    
Predicted Functional Partners:
SKIV2L
Ski2 like RNA helicase.
      
 0.585
ERCC3
ERCC excision repair 3, TFIIH core complex helicase subunit.
    
 0.546
ACTR8
Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily.
    
 0.541
RUVBL1
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
    
 0.524
PDE6C
Phosphodiesterase.
      
 0.499
DUSP11
Dual specificity phosphatase 11.
     
 0.498
ZNF106
Zinc finger protein 106.
  
 
 0.496
ACTL6A
Actin like 6A; Belongs to the actin family.
   
 0.481
ACTL6B
Actin like 6B; Belongs to the actin family.
   
 0.481
ACTR5
Uncharacterized protein; Belongs to the actin family.
    
 0.474
Your Current Organism:
Cercocebus atys
NCBI taxonomy Id: 9531
Other names: C. atys, Cercocebus torquatus atys, sooty mangabey
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