Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HMGB4High mobility group box 4. (191 aa)    
Predicted Functional Partners:
ENSCATP00000000678
Uncharacterized protein.
   
  0.894
HMGB1
High mobility group box 1.
   
  0.894
ENSCATP00000008212
Uncharacterized protein.
   
  0.894
LOC105587074
Uncharacterized protein.
   
  0.894
TLR4
Toll like receptor 4; Belongs to the Toll-like receptor family.
    
 0.767
AGER
Advanced glycosylation end-product specific receptor.
    
 0.739
SP100
SP100 nuclear antigen.
    
  0.736
SEC23IP
SEC23 interacting protein.
   
   0.697
PKNOX1
PBX/knotted 1 homeobox 1.
    
   0.677
MIEN1
Migration and invasion enhancer 1.
    
  0.634
Your Current Organism:
Cercocebus atys
NCBI taxonomy Id: 9531
Other names: C. atys, Cercocebus torquatus atys, sooty mangabey
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