PCDH11X protein (Cercocebus atys) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

PCDH11X

Uncharacterized protein. (1347 aa)

Predicted Functional Partners:

ST6GAL2

0.523

FUCA2

0.501

SETD4

0.498

SLC5A7

0.498

SLC37A3

0.498

PPP1R10

0.467

TIMD4

0.465

ARL13A

0.454

TGIF2LY

0.448

TNFSF18

0.448

Your Current Organism:

Cercocebus atys

NCBI taxonomy Id: 9531
Other names: C. atys, Cercocebus torquatus atys, sooty mangabey

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARL13A	PCDH11X	ENSCATP00000000486	ENSCATP00000001381	ADP ribosylation factor like GTPase 13A.	Uncharacterized protein.	0.454
FUCA2	PCDH11X	ENSCATP00000026763	ENSCATP00000001381	Alpha-L-fucosidase; Alpha-L-fucosidase is responsible for hydrolyzing the alpha- 1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins.	Uncharacterized protein.	0.501
PCDH11X	ARL13A	ENSCATP00000001381	ENSCATP00000000486	Uncharacterized protein.	ADP ribosylation factor like GTPase 13A.	0.454
PCDH11X	FUCA2	ENSCATP00000001381	ENSCATP00000026763	Uncharacterized protein.	Alpha-L-fucosidase; Alpha-L-fucosidase is responsible for hydrolyzing the alpha- 1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins.	0.501
PCDH11X	PPP1R10	ENSCATP00000001381	ENSCATP00000033126	Uncharacterized protein.	Protein phosphatase 1 regulatory subunit 10.	0.467
PCDH11X	SETD4	ENSCATP00000001381	ENSCATP00000001630	Uncharacterized protein.	SET domain containing 4.	0.498
PCDH11X	SLC37A3	ENSCATP00000001381	ENSCATP00000031885	Uncharacterized protein.	Solute carrier family 37 member 3.	0.498
PCDH11X	SLC5A7	ENSCATP00000001381	ENSCATP00000002986	Uncharacterized protein.	Solute carrier family 5 member 7; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	0.498
PCDH11X	ST6GAL2	ENSCATP00000001381	ENSCATP00000043844	Uncharacterized protein.	ST6 beta-galactoside alpha-2,6-sialyltransferase 2; Belongs to the glycosyltransferase 29 family.	0.523
PCDH11X	TGIF2LY	ENSCATP00000001381	ENSCATP00000000724	Uncharacterized protein.	TGFB induced factor homeobox 2 like Y-linked.	0.448
PCDH11X	TIMD4	ENSCATP00000001381	ENSCATP00000009580	Uncharacterized protein.	T cell immunoglobulin and mucin domain containing 4.	0.465
PCDH11X	TNFSF18	ENSCATP00000001381	ENSCATP00000001700	Uncharacterized protein.	TNF superfamily member 18.	0.448
PPP1R10	PCDH11X	ENSCATP00000033126	ENSCATP00000001381	Protein phosphatase 1 regulatory subunit 10.	Uncharacterized protein.	0.467
PPP1R10	SETD4	ENSCATP00000033126	ENSCATP00000001630	Protein phosphatase 1 regulatory subunit 10.	SET domain containing 4.	0.718
PPP1R10	SLC37A3	ENSCATP00000033126	ENSCATP00000031885	Protein phosphatase 1 regulatory subunit 10.	Solute carrier family 37 member 3.	0.687
PPP1R10	SLC5A7	ENSCATP00000033126	ENSCATP00000002986	Protein phosphatase 1 regulatory subunit 10.	Solute carrier family 5 member 7; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	0.712
PPP1R10	ST6GAL2	ENSCATP00000033126	ENSCATP00000043844	Protein phosphatase 1 regulatory subunit 10.	ST6 beta-galactoside alpha-2,6-sialyltransferase 2; Belongs to the glycosyltransferase 29 family.	0.712
PPP1R10	TIMD4	ENSCATP00000033126	ENSCATP00000009580	Protein phosphatase 1 regulatory subunit 10.	T cell immunoglobulin and mucin domain containing 4.	0.609
SETD4	PCDH11X	ENSCATP00000001630	ENSCATP00000001381	SET domain containing 4.	Uncharacterized protein.	0.498
SETD4	PPP1R10	ENSCATP00000001630	ENSCATP00000033126	SET domain containing 4.	Protein phosphatase 1 regulatory subunit 10.	0.718