RANBP6 protein (Cercocebus atys) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RANBP6

Uncharacterized protein. (381 aa)

Predicted Functional Partners:

IPO5

0.918

RRP12

0.856

HEATR1

0.832

KPNB1

0.831

POLR1A

0.825

GMPS

0.824

NAT10

0.803

NUP54

0.798

POLR1B

0.789

XPO5

0.788

Your Current Organism:

Cercocebus atys

NCBI taxonomy Id: 9531
Other names: C. atys, Cercocebus torquatus atys, sooty mangabey

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GMPS	HEATR1	ENSCATP00000014398	ENSCATP00000007687	Guanine monophosphate synthase.	HEAT repeat containing 1.	0.779
GMPS	IPO5	ENSCATP00000014398	ENSCATP00000029966	Guanine monophosphate synthase.	Importin 5.	0.775
GMPS	NAT10	ENSCATP00000014398	ENSCATP00000029134	Guanine monophosphate synthase.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.790
GMPS	POLR1A	ENSCATP00000014398	ENSCATP00000011257	Guanine monophosphate synthase.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.826
GMPS	POLR1B	ENSCATP00000014398	ENSCATP00000028163	Guanine monophosphate synthase.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.885
GMPS	RANBP6	ENSCATP00000014398	ENSCATP00000001410	Guanine monophosphate synthase.	Uncharacterized protein.	0.824
GMPS	RRP12	ENSCATP00000014398	ENSCATP00000045930	Guanine monophosphate synthase.	Ribosomal RNA processing 12 homolog.	0.480
HEATR1	GMPS	ENSCATP00000007687	ENSCATP00000014398	HEAT repeat containing 1.	Guanine monophosphate synthase.	0.779
HEATR1	IPO5	ENSCATP00000007687	ENSCATP00000029966	HEAT repeat containing 1.	Importin 5.	0.752
HEATR1	NAT10	ENSCATP00000007687	ENSCATP00000029134	HEAT repeat containing 1.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.991
HEATR1	POLR1A	ENSCATP00000007687	ENSCATP00000011257	HEAT repeat containing 1.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.972
HEATR1	POLR1B	ENSCATP00000007687	ENSCATP00000028163	HEAT repeat containing 1.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.888
HEATR1	RANBP6	ENSCATP00000007687	ENSCATP00000001410	HEAT repeat containing 1.	Uncharacterized protein.	0.832
HEATR1	RRP12	ENSCATP00000007687	ENSCATP00000045930	HEAT repeat containing 1.	Ribosomal RNA processing 12 homolog.	0.981
IPO5	GMPS	ENSCATP00000029966	ENSCATP00000014398	Importin 5.	Guanine monophosphate synthase.	0.775
IPO5	HEATR1	ENSCATP00000029966	ENSCATP00000007687	Importin 5.	HEAT repeat containing 1.	0.752
IPO5	KPNB1	ENSCATP00000029966	ENSCATP00000027564	Importin 5.	Karyopherin subunit beta 1.	0.980
IPO5	NAT10	ENSCATP00000029966	ENSCATP00000029134	Importin 5.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.596
IPO5	NUP54	ENSCATP00000029966	ENSCATP00000036229	Importin 5.	Nucleoporin 54.	0.829
IPO5	POLR1A	ENSCATP00000029966	ENSCATP00000011257	Importin 5.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.763