Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CALCOCO2Calcium binding and coiled-coil domain 2. (470 aa)    
Predicted Functional Partners:
MAP1LC3C
Microtubule associated protein 1 light chain 3 gamma.
    
 0.993
TBK1
TANK binding kinase 1.
    
 0.993
GABARAPL2
GABA type A receptor associated protein like 2.
   
 0.986
MAP1LC3A
Microtubule associated protein 1 light chain 3 alpha.
   
 0.984
MAP1LC3B
Uncharacterized protein.
   
 0.970
TAX1BP1
Tax1 binding protein 1.
    
0.965
OPTN
Optineurin.
    
 0.962
SQSTM1
Sequestosome 1.
    
 0.953
GABARAP
Uncharacterized protein.
   
 0.952
LOC105589083
Uncharacterized protein.
   
 0.950
Your Current Organism:
Cercocebus atys
NCBI taxonomy Id: 9531
Other names: C. atys, Cercocebus torquatus atys, sooty mangabey
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