SECISBP2 protein (Cercocebus atys) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SECISBP2

SECIS binding protein 2. (856 aa)

Predicted Functional Partners:

EEFSEC

0.921

ENSCATP00000041083

0.808

ANKRD45

0.808

HSPA5

0.808

SARS2

0.685

SARS1

0.685

CALR3

0.668

CALR

0.668

ERO1A

0.655

ERO1B

0.655

Your Current Organism:

Cercocebus atys

NCBI taxonomy Id: 9531
Other names: C. atys, Cercocebus torquatus atys, sooty mangabey

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANKRD45	CALR	ENSCATP00000043643	ENSCATP00000019363	ANK_REP_REGION domain-containing protein.	Calreticulin.	0.858
ANKRD45	CALR3	ENSCATP00000043643	ENSCATP00000014334	ANK_REP_REGION domain-containing protein.	Calreticulin 3.	0.858
ANKRD45	ERO1A	ENSCATP00000043643	ENSCATP00000015707	ANK_REP_REGION domain-containing protein.	Endoplasmic reticulum oxidoreductase 1 alpha.	0.624
ANKRD45	ERO1B	ENSCATP00000043643	ENSCATP00000037048	ANK_REP_REGION domain-containing protein.	Endoplasmic reticulum oxidoreductase 1 beta.	0.624
ANKRD45	SECISBP2	ENSCATP00000043643	ENSCATP00000001847	ANK_REP_REGION domain-containing protein.	SECIS binding protein 2.	0.808
CALR	ANKRD45	ENSCATP00000019363	ENSCATP00000043643	Calreticulin.	ANK_REP_REGION domain-containing protein.	0.858
CALR	ENSCATP00000041083	ENSCATP00000019363	ENSCATP00000041083	Calreticulin.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.959
CALR	HSPA5	ENSCATP00000019363	ENSCATP00000044399	Calreticulin.	Heat shock protein family A (Hsp70) member 5; Belongs to the heat shock protein 70 family.	0.959
CALR	SECISBP2	ENSCATP00000019363	ENSCATP00000001847	Calreticulin.	SECIS binding protein 2.	0.668
CALR3	ANKRD45	ENSCATP00000014334	ENSCATP00000043643	Calreticulin 3.	ANK_REP_REGION domain-containing protein.	0.858
CALR3	ENSCATP00000041083	ENSCATP00000014334	ENSCATP00000041083	Calreticulin 3.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.944
CALR3	HSPA5	ENSCATP00000014334	ENSCATP00000044399	Calreticulin 3.	Heat shock protein family A (Hsp70) member 5; Belongs to the heat shock protein 70 family.	0.944
CALR3	SECISBP2	ENSCATP00000014334	ENSCATP00000001847	Calreticulin 3.	SECIS binding protein 2.	0.668
EEFSEC	SARS1	ENSCATP00000006179	ENSCATP00000040766	Eukaryotic elongation factor, selenocysteine-tRNA specific.	Seryl-tRNA synthetase.	0.543
EEFSEC	SARS2	ENSCATP00000006179	ENSCATP00000023846	Eukaryotic elongation factor, selenocysteine-tRNA specific.	Seryl-tRNA synthetase 2, mitochondrial.	0.543
EEFSEC	SECISBP2	ENSCATP00000006179	ENSCATP00000001847	Eukaryotic elongation factor, selenocysteine-tRNA specific.	SECIS binding protein 2.	0.921
ENSCATP00000041083	CALR	ENSCATP00000041083	ENSCATP00000019363	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Calreticulin.	0.959
ENSCATP00000041083	CALR3	ENSCATP00000041083	ENSCATP00000014334	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Calreticulin 3.	0.944
ENSCATP00000041083	ERO1A	ENSCATP00000041083	ENSCATP00000015707	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Endoplasmic reticulum oxidoreductase 1 alpha.	0.686
ENSCATP00000041083	ERO1B	ENSCATP00000041083	ENSCATP00000037048	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Endoplasmic reticulum oxidoreductase 1 beta.	0.685