ENSCATP00000004142 protein (Cercocebus atys)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCATP00000004142

Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (403 aa)

Predicted Functional Partners:

FAU

0.992

RPL10

0.978

RPS9

0.960

RPL30

0.955

ENSCATP00000017426

0.955

RPS21

0.954

TUFM

0.954

ENSCATP00000031359

0.953

RPL13

0.953

RPS28

0.952

Your Current Organism:

Cercocebus atys

NCBI taxonomy Id: 9531
Other names: C. atys, Cercocebus torquatus atys, sooty mangabey

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCATP00000004142	ENSCATP00000017426	ENSCATP00000004142	ENSCATP00000017426	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Ribosomal_L7Ae domain-containing protein.	0.955
ENSCATP00000004142	ENSCATP00000031359	ENSCATP00000004142	ENSCATP00000031359	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.953
ENSCATP00000004142	FAU	ENSCATP00000004142	ENSCATP00000039454	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.992
ENSCATP00000004142	RPL10	ENSCATP00000004142	ENSCATP00000013786	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Ribosomal_L16 domain-containing protein.	0.978
ENSCATP00000004142	RPL13	ENSCATP00000004142	ENSCATP00000039646	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.953
ENSCATP00000004142	RPL30	ENSCATP00000004142	ENSCATP00000009057	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L30.	0.955
ENSCATP00000004142	RPS21	ENSCATP00000004142	ENSCATP00000016022	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.	0.954
ENSCATP00000004142	RPS28	ENSCATP00000004142	ENSCATP00000003863	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein S28.	0.952
ENSCATP00000004142	RPS9	ENSCATP00000004142	ENSCATP00000010101	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	0.960
ENSCATP00000004142	TUFM	ENSCATP00000004142	ENSCATP00000024617	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.954
ENSCATP00000017426	ENSCATP00000004142	ENSCATP00000017426	ENSCATP00000004142	Ribosomal_L7Ae domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.955
ENSCATP00000017426	ENSCATP00000031359	ENSCATP00000017426	ENSCATP00000031359	Ribosomal_L7Ae domain-containing protein.	Uncharacterized protein.	0.980
ENSCATP00000017426	FAU	ENSCATP00000017426	ENSCATP00000039454	Ribosomal_L7Ae domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
ENSCATP00000017426	RPL10	ENSCATP00000017426	ENSCATP00000013786	Ribosomal_L7Ae domain-containing protein.	Ribosomal_L16 domain-containing protein.	0.990
ENSCATP00000017426	RPL13	ENSCATP00000017426	ENSCATP00000039646	Ribosomal_L7Ae domain-containing protein.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.981
ENSCATP00000017426	RPS21	ENSCATP00000017426	ENSCATP00000016022	Ribosomal_L7Ae domain-containing protein.	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.	0.982
ENSCATP00000017426	RPS28	ENSCATP00000017426	ENSCATP00000003863	Ribosomal_L7Ae domain-containing protein.	Ribosomal protein S28.	0.985
ENSCATP00000017426	RPS9	ENSCATP00000017426	ENSCATP00000010101	Ribosomal_L7Ae domain-containing protein.	Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	0.982
ENSCATP00000031359	ENSCATP00000004142	ENSCATP00000031359	ENSCATP00000004142	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.953
ENSCATP00000031359	ENSCATP00000017426	ENSCATP00000031359	ENSCATP00000017426	Uncharacterized protein.	Ribosomal_L7Ae domain-containing protein.	0.980