CIDEB protein (Cercocebus atys) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CIDEB

Cell death inducing DFFA like effector b. (220 aa)

Predicted Functional Partners:

RUSC2

0.641

KLHL12

0.639

CIDEA

0.590

ABCG4

0.588

APOB

0.584

LPIN1

0.578

TM6SF2

0.563

NPC1L1

0.557

DFFA

0.512

DFFB

0.509

Your Current Organism:

Cercocebus atys

NCBI taxonomy Id: 9531
Other names: C. atys, Cercocebus torquatus atys, sooty mangabey

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCG4	CIDEB	ENSCATP00000037553	ENSCATP00000008529	ATP binding cassette subfamily G member 4.	Cell death inducing DFFA like effector b.	0.588
ABCG4	RUSC2	ENSCATP00000037553	ENSCATP00000011129	ATP binding cassette subfamily G member 4.	RUN and SH3 domain containing 2.	0.615
APOB	CIDEB	ENSCATP00000008599	ENSCATP00000008529	Apolipoprotein B.	Cell death inducing DFFA like effector b.	0.584
APOB	NPC1L1	ENSCATP00000008599	ENSCATP00000022324	Apolipoprotein B.	NPC1 like intracellular cholesterol transporter 1.	0.556
CIDEA	CIDEB	ENSCATP00000008516	ENSCATP00000008529	Cell death inducing DFFA like effector a.	Cell death inducing DFFA like effector b.	0.590
CIDEA	DFFB	ENSCATP00000008516	ENSCATP00000001112	Cell death inducing DFFA like effector a.	DNA fragmentation factor subunit beta.	0.610
CIDEB	ABCG4	ENSCATP00000008529	ENSCATP00000037553	Cell death inducing DFFA like effector b.	ATP binding cassette subfamily G member 4.	0.588
CIDEB	APOB	ENSCATP00000008529	ENSCATP00000008599	Cell death inducing DFFA like effector b.	Apolipoprotein B.	0.584
CIDEB	CIDEA	ENSCATP00000008529	ENSCATP00000008516	Cell death inducing DFFA like effector b.	Cell death inducing DFFA like effector a.	0.590
CIDEB	DFFA	ENSCATP00000008529	ENSCATP00000039029	Cell death inducing DFFA like effector b.	DNA fragmentation factor subunit alpha.	0.512
CIDEB	DFFB	ENSCATP00000008529	ENSCATP00000001112	Cell death inducing DFFA like effector b.	DNA fragmentation factor subunit beta.	0.509
CIDEB	KLHL12	ENSCATP00000008529	ENSCATP00000015654	Cell death inducing DFFA like effector b.	BTB domain-containing protein.	0.639
CIDEB	LPIN1	ENSCATP00000008529	ENSCATP00000033771	Cell death inducing DFFA like effector b.	Lipin 1.	0.578
CIDEB	NPC1L1	ENSCATP00000008529	ENSCATP00000022324	Cell death inducing DFFA like effector b.	NPC1 like intracellular cholesterol transporter 1.	0.557
CIDEB	RUSC2	ENSCATP00000008529	ENSCATP00000011129	Cell death inducing DFFA like effector b.	RUN and SH3 domain containing 2.	0.641
CIDEB	TM6SF2	ENSCATP00000008529	ENSCATP00000030373	Cell death inducing DFFA like effector b.	Transmembrane 6 superfamily member 2.	0.563
DFFA	CIDEB	ENSCATP00000039029	ENSCATP00000008529	DNA fragmentation factor subunit alpha.	Cell death inducing DFFA like effector b.	0.512
DFFA	DFFB	ENSCATP00000039029	ENSCATP00000001112	DNA fragmentation factor subunit alpha.	DNA fragmentation factor subunit beta.	0.995
DFFB	CIDEA	ENSCATP00000001112	ENSCATP00000008516	DNA fragmentation factor subunit beta.	Cell death inducing DFFA like effector a.	0.610
DFFB	CIDEB	ENSCATP00000001112	ENSCATP00000008529	DNA fragmentation factor subunit beta.	Cell death inducing DFFA like effector b.	0.509