GNA13 protein (Cercocebus atys) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GNA13

G protein subunit alpha 13. (377 aa)

Predicted Functional Partners:

ARHGEF12

0.999

GNA12

0.999

ARHGEF1

0.998

TBXA2R

0.996

ARHGEF11

0.995

ADRA1A

0.986

RHOA

0.983

F2R

0.971

ADRA1D

0.963

ADRA1B

0.957

Your Current Organism:

Cercocebus atys

NCBI taxonomy Id: 9531
Other names: C. atys, Cercocebus torquatus atys, sooty mangabey

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADRA1A	ADRA1B	ENSCATP00000045473	ENSCATP00000042488	Adrenoceptor alpha 1A.	Adrenoceptor alpha 1B.	0.981
ADRA1A	ADRA1D	ENSCATP00000045473	ENSCATP00000045523	Adrenoceptor alpha 1A.	Adrenoceptor alpha 1D; Belongs to the G-protein coupled receptor 1 family.	0.970
ADRA1A	ARHGEF1	ENSCATP00000045473	ENSCATP00000015225	Adrenoceptor alpha 1A.	Rho guanine nucleotide exchange factor 1.	0.467
ADRA1A	ARHGEF12	ENSCATP00000045473	ENSCATP00000024768	Adrenoceptor alpha 1A.	Rho guanine nucleotide exchange factor 12.	0.586
ADRA1A	GNA12	ENSCATP00000045473	ENSCATP00000042629	Adrenoceptor alpha 1A.	G protein subunit alpha 12.	0.976
ADRA1A	GNA13	ENSCATP00000045473	ENSCATP00000010032	Adrenoceptor alpha 1A.	G protein subunit alpha 13.	0.986
ADRA1A	TBXA2R	ENSCATP00000045473	ENSCATP00000027831	Adrenoceptor alpha 1A.	Thromboxane A2 receptor.	0.727
ADRA1B	ADRA1A	ENSCATP00000042488	ENSCATP00000045473	Adrenoceptor alpha 1B.	Adrenoceptor alpha 1A.	0.981
ADRA1B	ADRA1D	ENSCATP00000042488	ENSCATP00000045523	Adrenoceptor alpha 1B.	Adrenoceptor alpha 1D; Belongs to the G-protein coupled receptor 1 family.	0.939
ADRA1B	GNA12	ENSCATP00000042488	ENSCATP00000042629	Adrenoceptor alpha 1B.	G protein subunit alpha 12.	0.956
ADRA1B	GNA13	ENSCATP00000042488	ENSCATP00000010032	Adrenoceptor alpha 1B.	G protein subunit alpha 13.	0.957
ADRA1B	TBXA2R	ENSCATP00000042488	ENSCATP00000027831	Adrenoceptor alpha 1B.	Thromboxane A2 receptor.	0.779
ADRA1D	ADRA1A	ENSCATP00000045523	ENSCATP00000045473	Adrenoceptor alpha 1D; Belongs to the G-protein coupled receptor 1 family.	Adrenoceptor alpha 1A.	0.970
ADRA1D	ADRA1B	ENSCATP00000045523	ENSCATP00000042488	Adrenoceptor alpha 1D; Belongs to the G-protein coupled receptor 1 family.	Adrenoceptor alpha 1B.	0.939
ADRA1D	ARHGEF12	ENSCATP00000045523	ENSCATP00000024768	Adrenoceptor alpha 1D; Belongs to the G-protein coupled receptor 1 family.	Rho guanine nucleotide exchange factor 12.	0.597
ADRA1D	GNA12	ENSCATP00000045523	ENSCATP00000042629	Adrenoceptor alpha 1D; Belongs to the G-protein coupled receptor 1 family.	G protein subunit alpha 12.	0.963
ADRA1D	GNA13	ENSCATP00000045523	ENSCATP00000010032	Adrenoceptor alpha 1D; Belongs to the G-protein coupled receptor 1 family.	G protein subunit alpha 13.	0.963
ADRA1D	TBXA2R	ENSCATP00000045523	ENSCATP00000027831	Adrenoceptor alpha 1D; Belongs to the G-protein coupled receptor 1 family.	Thromboxane A2 receptor.	0.847
ARHGEF1	ADRA1A	ENSCATP00000015225	ENSCATP00000045473	Rho guanine nucleotide exchange factor 1.	Adrenoceptor alpha 1A.	0.467
ARHGEF1	ARHGEF11	ENSCATP00000015225	ENSCATP00000015700	Rho guanine nucleotide exchange factor 1.	Rho guanine nucleotide exchange factor 11.	0.944