Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RABGEF1Uncharacterized protein. (494 aa)    
Predicted Functional Partners:
RAB5A
Uncharacterized protein.
   
 0.988
RAB5C
RAB5C, member RAS oncogene family.
   
 0.988
RABEP1
Rabaptin, RAB GTPase binding effector protein 1.
   
 0.987
RABEP2
Rabaptin, RAB GTPase binding effector protein 2.
   
 0.965
GGA1
Golgi associated, gamma adaptin ear containing, ARF binding protein 1.
   
 0.927
RAB24
RAB24, member RAS oncogene family.
   
 0.902
RAB21
RAB21, member RAS oncogene family.
    
 0.897
RAB22A
RAB22A, member RAS oncogene family.
   
 0.889
ENSCATP00000007470
Uncharacterized protein.
   
 0.887
RAB17
RAB17, member RAS oncogene family.
   
 0.887
Your Current Organism:
Cercocebus atys
NCBI taxonomy Id: 9531
Other names: C. atys, Cercocebus torquatus atys, sooty mangabey
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