STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCATP00000010488RRM domain-containing protein. (355 aa)    
Predicted Functional Partners:
HNRNPA2B1
Heterogeneous nuclear ribonucleoprotein A2/B1.
   
 0.965
DDX5
DEAD-box helicase 5; Belongs to the DEAD box helicase family.
   
 0.897
HNRNPL
Heterogeneous nuclear ribonucleoprotein L.
   
 0.885
HNRNPD
Heterogeneous nuclear ribonucleoprotein D.
   
 0.874
HNRNPM
Heterogeneous nuclear ribonucleoprotein M.
   
 0.870
HNRNPU
Heterogeneous nuclear ribonucleoprotein U.
   
 0.866
HNRNPAB
Heterogeneous nuclear ribonucleoprotein A/B.
   
 0.854
HNRNPUL1
Heterogeneous nuclear ribonucleoprotein U like 1.
   
 0.844
HNRNPA0
Heterogeneous nuclear ribonucleoprotein A0.
   
 0.834
NCBP2
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]
   
 0.833
Your Current Organism:
Cercocebus atys
NCBI taxonomy Id: 9531
Other names: C. atys, Cercocebus torquatus atys, sooty mangabey
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