Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VTA1Vesicle trafficking 1. (231 aa)    
Predicted Functional Partners:
VPS4A
Uncharacterized protein; Belongs to the AAA ATPase family.
   
 0.999
VPS4B
Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family.
   
 0.998
CHMP5
Charged multivesicular body protein 5.
   
 0.997
CHMP1A
Charged multivesicular body protein 1A.
   
 0.989
CHMP2A
Charged multivesicular body protein 2A.
   
 0.962
IST1
IST1 factor associated with ESCRT-III.
   
 
 0.953
CHMP4C
Charged multivesicular body protein 4C.
   
 0.907
ENSCATP00000029662
Uncharacterized protein.
   
 0.880
CHMP4B
Charged multivesicular body protein 4B.
   
 0.880
GCH1
GTP cyclohydrolase 1.
   
   0.823
Your Current Organism:
Cercocebus atys
NCBI taxonomy Id: 9531
Other names: C. atys, Cercocebus torquatus atys, sooty mangabey
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