Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
UPF3AUPF3A regulator of nonsense mediated mRNA decay. (463 aa)    
Predicted Functional Partners:
UPF1
UPF1 RNA helicase and ATPase.
    
 0.998
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
   
 0.997
UPF3B
UPF3B regulator of nonsense mediated mRNA decay.
  
 
0.989
SMG5
SMG5 nonsense mediated mRNA decay factor.
   
 0.988
RBM8A
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.986
ALYREF
Aly/REF export factor.
    
 0.983
CASC3
CASC3 exon junction complex subunit.
    
 0.980
ENSCATP00000028467
PWI domain-containing protein.
    
 0.972
SMG6
SMG6 nonsense mediated mRNA decay factor.
   
 0.950
RNPS1
RRM domain-containing protein.
    
 0.949
Your Current Organism:
Cercocebus atys
NCBI taxonomy Id: 9531
Other names: C. atys, Cercocebus torquatus atys, sooty mangabey
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