SON protein (Cercocebus atys) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SON

SON DNA binding protein. (2426 aa)

Predicted Functional Partners:

ANKRD11

0.994

LOC105574411

0.980

ENSCATP00000012505

0.958

RBM39

0.958

SF3B1

0.928

DDX5

0.919

PNISR

0.914

ANKRD12

0.897

SRSF11

0.891

SPC24

0.887

Your Current Organism:

Cercocebus atys

NCBI taxonomy Id: 9531
Other names: C. atys, Cercocebus torquatus atys, sooty mangabey

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANKRD11	SON	ENSCATP00000028988	ENSCATP00000011175	Ankyrin repeat domain 11.	SON DNA binding protein.	0.994
ANKRD12	SON	ENSCATP00000023151	ENSCATP00000011175	Ankyrin repeat domain 12.	SON DNA binding protein.	0.897
DDX5	ENSCATP00000012505	ENSCATP00000035917	ENSCATP00000012505	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.972
DDX5	PNISR	ENSCATP00000035917	ENSCATP00000003246	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	PNN interacting serine and arginine rich protein.	0.666
DDX5	RBM39	ENSCATP00000035917	ENSCATP00000018161	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	RNA binding motif protein 39.	0.972
DDX5	SF3B1	ENSCATP00000035917	ENSCATP00000024501	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	Splicing factor 3b subunit 1.	0.954
DDX5	SON	ENSCATP00000035917	ENSCATP00000011175	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	SON DNA binding protein.	0.919
DDX5	SPC24	ENSCATP00000035917	ENSCATP00000029872	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.994
ENSCATP00000012505	DDX5	ENSCATP00000012505	ENSCATP00000035917	Uncharacterized protein.	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	0.972
ENSCATP00000012505	LOC105574411	ENSCATP00000012505	ENSCATP00000025069	Uncharacterized protein.	Uncharacterized protein.	0.470
ENSCATP00000012505	PNISR	ENSCATP00000012505	ENSCATP00000003246	Uncharacterized protein.	PNN interacting serine and arginine rich protein.	0.881
ENSCATP00000012505	SF3B1	ENSCATP00000012505	ENSCATP00000024501	Uncharacterized protein.	Splicing factor 3b subunit 1.	0.951
ENSCATP00000012505	SON	ENSCATP00000012505	ENSCATP00000011175	Uncharacterized protein.	SON DNA binding protein.	0.958
ENSCATP00000012505	SRSF11	ENSCATP00000012505	ENSCATP00000041941	Uncharacterized protein.	Serine and arginine rich splicing factor 11.	0.967
LOC105574411	ENSCATP00000012505	ENSCATP00000025069	ENSCATP00000012505	Uncharacterized protein.	Uncharacterized protein.	0.470
LOC105574411	RBM39	ENSCATP00000025069	ENSCATP00000018161	Uncharacterized protein.	RNA binding motif protein 39.	0.470
LOC105574411	SF3B1	ENSCATP00000025069	ENSCATP00000024501	Uncharacterized protein.	Splicing factor 3b subunit 1.	0.607
LOC105574411	SON	ENSCATP00000025069	ENSCATP00000011175	Uncharacterized protein.	SON DNA binding protein.	0.980
LOC105574411	SRSF11	ENSCATP00000025069	ENSCATP00000041941	Uncharacterized protein.	Serine and arginine rich splicing factor 11.	0.769
PNISR	DDX5	ENSCATP00000003246	ENSCATP00000035917	PNN interacting serine and arginine rich protein.	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	0.666