ENSCATP00000016658 protein (Cercocebus atys)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCATP00000016658

RBM1CTR domain-containing protein. (295 aa)

Predicted Functional Partners:

FAU

0.671

HNRNPM

0.580

TRA2B

0.560

HNRNPU

0.511

NCBP1

0.498

THOC2

0.478

PCBP1

0.474

NCBP2

0.472

ENSCATP00000020494

0.468

HNRNPK

0.468

Your Current Organism:

Cercocebus atys

NCBI taxonomy Id: 9531
Other names: C. atys, Cercocebus torquatus atys, sooty mangabey

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCATP00000016658	ENSCATP00000020494	ENSCATP00000016658	ENSCATP00000020494	RBM1CTR domain-containing protein.	Uncharacterized protein.	0.468
ENSCATP00000016658	FAU	ENSCATP00000016658	ENSCATP00000039454	RBM1CTR domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.671
ENSCATP00000016658	HNRNPK	ENSCATP00000016658	ENSCATP00000026985	RBM1CTR domain-containing protein.	Uncharacterized protein.	0.468
ENSCATP00000016658	HNRNPM	ENSCATP00000016658	ENSCATP00000024136	RBM1CTR domain-containing protein.	Heterogeneous nuclear ribonucleoprotein M.	0.580
ENSCATP00000016658	HNRNPU	ENSCATP00000016658	ENSCATP00000023465	RBM1CTR domain-containing protein.	Heterogeneous nuclear ribonucleoprotein U.	0.511
ENSCATP00000016658	NCBP1	ENSCATP00000016658	ENSCATP00000002509	RBM1CTR domain-containing protein.	Nuclear cap binding protein subunit 1.	0.498
ENSCATP00000016658	NCBP2	ENSCATP00000016658	ENSCATP00000011607	RBM1CTR domain-containing protein.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.472
ENSCATP00000016658	PCBP1	ENSCATP00000016658	ENSCATP00000004155	RBM1CTR domain-containing protein.	Poly(rC) binding protein 1.	0.474
ENSCATP00000016658	THOC2	ENSCATP00000016658	ENSCATP00000001280	RBM1CTR domain-containing protein.	THO complex 2.	0.478
ENSCATP00000016658	TRA2B	ENSCATP00000016658	ENSCATP00000034494	RBM1CTR domain-containing protein.	Transformer 2 beta homolog.	0.560
ENSCATP00000020494	ENSCATP00000016658	ENSCATP00000020494	ENSCATP00000016658	Uncharacterized protein.	RBM1CTR domain-containing protein.	0.468
ENSCATP00000020494	HNRNPM	ENSCATP00000020494	ENSCATP00000024136	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein M.	0.849
ENSCATP00000020494	HNRNPU	ENSCATP00000020494	ENSCATP00000023465	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein U.	0.851
ENSCATP00000020494	NCBP1	ENSCATP00000020494	ENSCATP00000002509	Uncharacterized protein.	Nuclear cap binding protein subunit 1.	0.451
ENSCATP00000020494	NCBP2	ENSCATP00000020494	ENSCATP00000011607	Uncharacterized protein.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.566
ENSCATP00000020494	PCBP1	ENSCATP00000020494	ENSCATP00000004155	Uncharacterized protein.	Poly(rC) binding protein 1.	0.815
ENSCATP00000020494	TRA2B	ENSCATP00000020494	ENSCATP00000034494	Uncharacterized protein.	Transformer 2 beta homolog.	0.778
FAU	ENSCATP00000016658	ENSCATP00000039454	ENSCATP00000016658	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	RBM1CTR domain-containing protein.	0.671
FAU	TRA2B	ENSCATP00000039454	ENSCATP00000034494	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Transformer 2 beta homolog.	0.671
HNRNPK	ENSCATP00000016658	ENSCATP00000026985	ENSCATP00000016658	Uncharacterized protein.	RBM1CTR domain-containing protein.	0.468