STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SVEN_1965Putative phosphodiesterase. (547 aa)    
Predicted Functional Partners:
SVEN_3252
Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
     
 0.943
folE
GTP cyclohydrolase I type 1.
    
 0.936
SVEN_5700
GTP cyclohydrolase I type 1; Belongs to the GTP cyclohydrolase I family.
    
 0.936
SVEN_0864
Putative secreted alkaline phosphatase.
  
  
 
0.926
SVEN_1722
Putative secreted alkaline phosphatase.
  
  
 
0.918
SVEN_5706
Queuosine biosynthesis QueD, PTPS-I.
     
  0.900
SVEN_1966
Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.617
SVEN_1163
Glycerophosphoryl diester phosphodiesterase.
 
  
 0.529
SVEN_5864
Hypothetical protein.
 
  
 0.512
SVEN_0327
Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
     0.479
Your Current Organism:
Streptomyces venezuelae
NCBI taxonomy Id: 953739
Other names: S. venezuelae ATCC 10712, Streptomyces venezuelae ATCC 10712, Streptomyces venezuelae ISP 5230, Streptomyces venezuelae str. ATCC 10712, Streptomyces venezuelae strain ATCC 10712
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