Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZC3H3Zinc finger CCCH-type containing 3. (950 aa)    
Predicted Functional Partners:
PAPOLG
Poly(A) polymerase gamma.
    
 0.942
YTHDC1
YTH domain containing 1.
     
 0.924
RBM26
RNA binding motif protein 26.
   
 
 0.921
RBM27
Uncharacterized protein.
   
 
 0.909
CPSF3
Cleavage and polyadenylation specificity factor subunit 3.
   
 0.833
CPSF2
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.830
FIP1L1
Fip1 domain-containing protein.
    
 0.829
CSTF3
Cleavage stimulation factor subunit 3.
    
 0.828
CSTF1
Cleavage stimulation factor subunit 1.
   
 0.827
PCF11
PCF11 cleavage and polyadenylation factor subunit.
   
 0.825
Your Current Organism:
Macaca fascicularis
NCBI taxonomy Id: 9541
Other names: M. fascicularis, Macaca cynomolgus, Macaca irus, crab eating macaque, crab-eating macaque, cynomolgus macaque, cynomolgus monkey, cynomolgus monkeys, long-tailed macaque
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