Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
YIPF1Protein YIPF. (309 aa)    
Predicted Functional Partners:
YIPF6
Protein YIPF.
   
 
 0.905
YIPF4
Protein YIPF.
   
 
 0.741
FBXO32
F-box protein 32.
      
 0.689
YIPF5
Protein YIPF5; Plays a role in transport between endoplasmic reticulum and Golgi.
   
 
 0.630
YIPF7
Protein YIPF.
   
 
 0.630
SELENOS
Selenoprotein S.
   
 
 0.605
TRIM63
Tripartite motif containing 63.
      
 0.601
TVP23B
Golgi apparatus membrane protein TVP23 homolog.
   
 
 0.575
TVP23A
Golgi apparatus membrane protein TVP23 homolog.
   
 
 0.575
CDRT4
CMT1A duplicated region transcript 4.
   
 
 0.575
Your Current Organism:
Macaca fascicularis
NCBI taxonomy Id: 9541
Other names: M. fascicularis, Macaca cynomolgus, Macaca irus, crab eating macaque, crab-eating macaque, cynomolgus macaque, cynomolgus monkey, cynomolgus monkeys, long-tailed macaque
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