Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAP1Ubiquitin carboxyl-terminal hydrolase. (736 aa)    
Predicted Functional Partners:
ASXL2
ASXL transcriptional regulator 2.
   
 0.996
ASXL1
ASXL transcriptional regulator 1.
   
 0.992
HCFC1
Host cell factor C1.
    
 0.988
BARD1
BRCA1 associated RING domain 1.
    
 0.965
FOXK1
Forkhead box K1.
    
 0.965
OGT
O-linked N-acetylglucosamine (GlcNAc) transferase.
    
 0.964
FOXK2
Forkhead box K2.
    
 0.963
HCFC2
Host cell factor C2.
    
 0.962
ASXL3
ASXL transcriptional regulator 3.
   
 0.955
KDM1B
Lysine demethylase 1B.
   
 0.931
Your Current Organism:
Macaca fascicularis
NCBI taxonomy Id: 9541
Other names: M. fascicularis, Macaca cynomolgus, Macaca irus, crab eating macaque, crab-eating macaque, cynomolgus macaque, cynomolgus monkey, cynomolgus monkeys, long-tailed macaque
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