Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PTCD3Pentatricopeptide repeat domain 3. (689 aa)    
Predicted Functional Partners:
MRPS31
Mitochondrial ribosomal protein S31.
   
 0.988
DAP3
Death associated protein 3.
   
 0.987
MRPS9
Mitochondrial ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
 0.987
MRPS14
Mitochondrial ribosomal protein S14.
    
 0.985
MRPS35
MRP-S28 domain-containing protein.
   
 0.983
MRPS27
Mitochondrial ribosomal protein S27.
   
 0.981
MRPS18B
Uncharacterized protein.
   
 0.974
MRPS2
Mitochondrial ribosomal protein S2.
    
 0.973
MRPS11
Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.
    
 0.968
MRPS15
Mitochondrial ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family.
   
 0.967
Your Current Organism:
Macaca fascicularis
NCBI taxonomy Id: 9541
Other names: M. fascicularis, Macaca cynomolgus, Macaca irus, crab eating macaque, crab-eating macaque, cynomolgus macaque, cynomolgus monkey, cynomolgus monkeys, long-tailed macaque
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