Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LIN28BLin-28 homolog B. (256 aa)    
Predicted Functional Partners:
CDK2AP1
Cyclin dependent kinase 2 associated protein 1.
      
 0.819
BEND2
BEN domain containing 2.
      
 0.670
NEK4
NIMA related kinase 4.
    
 
 0.649
ARHGAP15
Rho GTPase activating protein 15.
      
 0.646
HMGA2
High mobility group AT-hook 2.
      
 0.603
ZNF394
Uncharacterized protein.
    
 0.597
CASP9
Caspase 9; Belongs to the peptidase C14A family.
    
 
 0.590
ENSMFAP00000017845
Uncharacterized protein.
   
   0.584
LIN28A
Lin-28 homolog A.
   
   0.584
TUT4
Terminal uridylyl transferase 4.
    
 0.579
Your Current Organism:
Macaca fascicularis
NCBI taxonomy Id: 9541
Other names: M. fascicularis, Macaca cynomolgus, Macaca irus, crab eating macaque, crab-eating macaque, cynomolgus macaque, cynomolgus monkey, cynomolgus monkeys, long-tailed macaque
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