Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ARID4A | ARID4B | ENSMFAP00000032226 | ENSMFAP00000025090 | AT-rich interaction domain 4A. | AT-rich interaction domain 4B. | 0.579 |
ARID4A | HDAC6 | ENSMFAP00000032226 | ENSMFAP00000025185 | AT-rich interaction domain 4A. | Histone deacetylase 6. | 0.826 |
ARID4B | ARID4A | ENSMFAP00000025090 | ENSMFAP00000032226 | AT-rich interaction domain 4B. | AT-rich interaction domain 4A. | 0.579 |
ARID4B | HDAC6 | ENSMFAP00000025090 | ENSMFAP00000025185 | AT-rich interaction domain 4B. | Histone deacetylase 6. | 0.826 |
EP300 | HDAC6 | ENSMFAP00000044906 | ENSMFAP00000025185 | E1A binding protein p300. | Histone deacetylase 6. | 0.820 |
EP300 | UBB | ENSMFAP00000044906 | ENSMFAP00000040895 | E1A binding protein p300. | Uncharacterized protein. | 0.557 |
EP300 | UBC | ENSMFAP00000044906 | ENSMFAP00000010479 | E1A binding protein p300. | Ubiquitin C. | 0.537 |
HDAC6 | ARID4A | ENSMFAP00000025185 | ENSMFAP00000032226 | Histone deacetylase 6. | AT-rich interaction domain 4A. | 0.826 |
HDAC6 | ARID4B | ENSMFAP00000025185 | ENSMFAP00000025090 | Histone deacetylase 6. | AT-rich interaction domain 4B. | 0.826 |
HDAC6 | EP300 | ENSMFAP00000025185 | ENSMFAP00000044906 | Histone deacetylase 6. | E1A binding protein p300. | 0.820 |
HDAC6 | KXD1 | ENSMFAP00000025185 | ENSMFAP00000027128 | Histone deacetylase 6. | Ubiquitin-60S ribosomal protein L40; [Ubiquitin]: Exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be in [...] | 0.827 |
HDAC6 | PRKN | ENSMFAP00000025185 | ENSMFAP00000004940 | Histone deacetylase 6. | E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily. | 0.870 |
HDAC6 | SQSTM1 | ENSMFAP00000025185 | ENSMFAP00000019996 | Histone deacetylase 6. | Sequestosome 1. | 0.800 |
HDAC6 | TARDBP | ENSMFAP00000025185 | ENSMFAP00000035671 | Histone deacetylase 6. | TAR DNA binding protein. | 0.928 |
HDAC6 | UBB | ENSMFAP00000025185 | ENSMFAP00000040895 | Histone deacetylase 6. | Uncharacterized protein. | 0.923 |
HDAC6 | UBC | ENSMFAP00000025185 | ENSMFAP00000010479 | Histone deacetylase 6. | Ubiquitin C. | 0.821 |
HDAC6 | VCP | ENSMFAP00000025185 | ENSMFAP00000013931 | Histone deacetylase 6. | Valosin containing protein; Belongs to the AAA ATPase family. | 0.875 |
KXD1 | HDAC6 | ENSMFAP00000027128 | ENSMFAP00000025185 | Ubiquitin-60S ribosomal protein L40; [Ubiquitin]: Exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be in [...] | Histone deacetylase 6. | 0.827 |
KXD1 | PRKN | ENSMFAP00000027128 | ENSMFAP00000004940 | Ubiquitin-60S ribosomal protein L40; [Ubiquitin]: Exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be in [...] | E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily. | 0.988 |
KXD1 | SQSTM1 | ENSMFAP00000027128 | ENSMFAP00000019996 | Ubiquitin-60S ribosomal protein L40; [Ubiquitin]: Exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be in [...] | Sequestosome 1. | 0.571 |
page 1 of 4