Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CNOT1 | CNOT4 | ENSMFAP00000022028 | ENSMFAP00000040562 | CCR4-NOT transcription complex subunit 1. | CCR4-NOT transcription complex subunit 4. | 0.997 |
CNOT1 | DCP2 | ENSMFAP00000022028 | ENSMFAP00000041837 | CCR4-NOT transcription complex subunit 1. | Decapping mRNA 2. | 0.587 |
CNOT1 | EDC3 | ENSMFAP00000022028 | ENSMFAP00000022779 | CCR4-NOT transcription complex subunit 1. | Enhancer of mRNA-decapping protein 3; Binds single-stranded RNA. Involved in the process of mRNA degradation and in the positive regulation of mRNA decapping (By similarity); Belongs to the EDC3 family. | 0.595 |
CNOT1 | KIFBP | ENSMFAP00000022028 | ENSMFAP00000025808 | CCR4-NOT transcription complex subunit 1. | KIF1 binding protein. | 0.803 |
CNOT1 | LSM1 | ENSMFAP00000022028 | ENSMFAP00000019291 | CCR4-NOT transcription complex subunit 1. | U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation. | 0.603 |
CNOT1 | PATL1 | ENSMFAP00000022028 | ENSMFAP00000039293 | CCR4-NOT transcription complex subunit 1. | PAT1 homolog 1, processing body mRNA decay factor. | 0.974 |
CNOT1 | PATL2 | ENSMFAP00000022028 | ENSMFAP00000034156 | CCR4-NOT transcription complex subunit 1. | PAT1 homolog 2. | 0.839 |
CNOT4 | CNOT1 | ENSMFAP00000040562 | ENSMFAP00000022028 | CCR4-NOT transcription complex subunit 4. | CCR4-NOT transcription complex subunit 1. | 0.997 |
CNOT4 | KIFBP | ENSMFAP00000040562 | ENSMFAP00000025808 | CCR4-NOT transcription complex subunit 4. | KIF1 binding protein. | 0.783 |
CNOT4 | PATL1 | ENSMFAP00000040562 | ENSMFAP00000039293 | CCR4-NOT transcription complex subunit 4. | PAT1 homolog 1, processing body mRNA decay factor. | 0.897 |
CNOT4 | PATL2 | ENSMFAP00000040562 | ENSMFAP00000034156 | CCR4-NOT transcription complex subunit 4. | PAT1 homolog 2. | 0.844 |
DCP2 | CNOT1 | ENSMFAP00000041837 | ENSMFAP00000022028 | Decapping mRNA 2. | CCR4-NOT transcription complex subunit 1. | 0.587 |
DCP2 | EDC3 | ENSMFAP00000041837 | ENSMFAP00000022779 | Decapping mRNA 2. | Enhancer of mRNA-decapping protein 3; Binds single-stranded RNA. Involved in the process of mRNA degradation and in the positive regulation of mRNA decapping (By similarity); Belongs to the EDC3 family. | 0.979 |
DCP2 | KIFBP | ENSMFAP00000041837 | ENSMFAP00000025808 | Decapping mRNA 2. | KIF1 binding protein. | 0.819 |
DCP2 | LSM1 | ENSMFAP00000041837 | ENSMFAP00000019291 | Decapping mRNA 2. | U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation. | 0.954 |
DCP2 | LSM4 | ENSMFAP00000041837 | ENSMFAP00000016037 | Decapping mRNA 2. | U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | 0.931 |
DCP2 | LSM7 | ENSMFAP00000041837 | ENSMFAP00000026238 | Decapping mRNA 2. | LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. | 0.874 |
DCP2 | NAXE | ENSMFAP00000041837 | ENSMFAP00000024167 | Decapping mRNA 2. | NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX. | 0.973 |
DCP2 | PATL1 | ENSMFAP00000041837 | ENSMFAP00000039293 | Decapping mRNA 2. | PAT1 homolog 1, processing body mRNA decay factor. | 0.985 |
DCP2 | PATL2 | ENSMFAP00000041837 | ENSMFAP00000034156 | Decapping mRNA 2. | PAT1 homolog 2. | 0.961 |
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