STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSMFAP00000043141Tudor domain-containing protein. (204 aa)    
Predicted Functional Partners:
PRPF6
Pre-mRNA processing factor 6.
    
 
 0.852
SNRPA1
U2 small nuclear ribonucleoprotein A; Involved in pre-mRNA splicing as component of the spliceosome. Associated with sn-RNP U2, where it contributes to the binding of stem loop IV of U2 snRNA.
     
 0.792
PHF5A
PHD finger protein 5A.
     
 0.773
DDX46
DEAD-box helicase 46.
   
 
 0.769
SNRPA
Small nuclear ribonucleoprotein polypeptide A.
   
 0.739
SF3B6
Splicing factor 3b subunit 6.
    
 0.737
RBM17
RNA binding motif protein 17.
   
 
 0.728
PUF60
Poly(U) binding splicing factor 60.
   
 0.723
U2SURP
U2 snRNP associated SURP domain containing.
    
  0.704
SF3A2
Splicing factor 3a subunit 2.
    
  0.691
Your Current Organism:
Macaca fascicularis
NCBI taxonomy Id: 9541
Other names: M. fascicularis, Macaca cynomolgus, Macaca irus, crab eating macaque, crab-eating macaque, cynomolgus macaque, cynomolgus monkey, cynomolgus monkeys, long-tailed macaque
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