Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
YIF1AProtein YIF1A. (293 aa)    
Predicted Functional Partners:
YIPF5
Protein YIPF.
   
 
 0.913
YIF1B
Yip1 interacting factor homolog B, membrane trafficking protein.
   
   0.775
RABAC1
PRA1 family protein.
   
 
 0.730
YIPF4
Protein YIPF.
   
 
 0.718
MAEA
Macrophage erythroblast attacher isoform 1.
   
 
 0.598
PHKA2
Phosphorylase b kinase regulatory subunit; Phosphorylase b kinase catalyzes the phosphorylation of serine in certain substrates, including troponin I.
      
 0.550
YIPF2
Protein YIPF.
   
  
 0.543
TMED10
Transmembrane emp24 domain-containing protein 10.
   
 
 0.535
VAPA
MSP domain-containing protein.
    
 
 0.519
KDELR3
ER lumen protein-retaining receptor.
   
 
 0.518
Your Current Organism:
Macaca mulatta
NCBI taxonomy Id: 9544
Other names: M. mulatta, Rhesus monkey, rhesus macaque, rhesus macaques, rhesus monkeys
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