Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CDK5RAP1CDK5 regulatory subunit-associated protein 1 isoform a. (587 aa)    
Predicted Functional Partners:
EXOSC3
Exosome complex component RRP40 isoform 1.
   
 
 0.938
EXOSC5
Exosome complex component RRP46.
   
   0.902
XRCC5
X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.
    
   0.739
PRPF40A
Pre-mRNA processing factor 40 homolog A.
 
 
   0.730
TMCO4
Transmembrane and coiled-coil domains 4.
 
      0.704
PRPF40B
Pre-mRNA processing factor 40 homolog B.
 
 
    0.660
POLR1A
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  
 0.622
SLC15A2
Proton-dependent dipeptide transporter PEPT2.
      
 0.602
CDK5
Cyclin dependent kinase 5.
      
 0.578
IMMP1L
Mitochondrial inner membrane protease subunit.
 
    0.574
Your Current Organism:
Macaca mulatta
NCBI taxonomy Id: 9544
Other names: M. mulatta, Rhesus monkey, rhesus macaque, rhesus macaques, rhesus monkeys
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