Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEMA4DSemaphorin 4D; Belongs to the semaphorin family. (862 aa)    
Predicted Functional Partners:
PLXNB1
Plexin B1.
    
 0.999
PLXNB2
Plexin B2.
   
 0.996
CD72
CD72 molecule.
    
 0.994
PTPRC
Protein tyrosine phosphatase receptor type C.
    
 0.964
PLXNA2
Plexin A2.
    
 0.882
RRAS
Ras-related protein R-Ras.
    
 0.857
PLXND1
Plexin D1.
    
 0.822
PLXNA4
Plexin A4.
    
 0.821
PLXNA1
Plexin A1.
   
 0.813
RND1
Rho-related GTP-binding protein Rho6.
    
 0.808
Your Current Organism:
Macaca mulatta
NCBI taxonomy Id: 9544
Other names: M. mulatta, Rhesus monkey, rhesus macaque, rhesus macaques, rhesus monkeys
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