FCF1 protein (Macaca mulatta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FCF1

rRNA-processing protein FCF1 homolog. (198 aa)

Predicted Functional Partners:

KRR1

0.997

UTP11

0.997

EMG1

0.996

WDR46

0.996

IMP3

0.995

NOP58

0.994

UTP20

0.994

NOL6

0.993

RRP9

0.991

BMS1

0.991

Your Current Organism:

Macaca mulatta

NCBI taxonomy Id: 9544
Other names: M. mulatta, Rhesus monkey, rhesus macaque, rhesus macaques, rhesus monkeys

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BMS1	EMG1	ENSMMUP00000009744	ENSMMUP00000013348	BMS1 ribosome biogenesis factor.	Uncharacterized protein.	0.981
BMS1	FCF1	ENSMMUP00000009744	ENSMMUP00000011656	BMS1 ribosome biogenesis factor.	rRNA-processing protein FCF1 homolog.	0.991
BMS1	IMP3	ENSMMUP00000009744	ENSMMUP00000021183	BMS1 ribosome biogenesis factor.	IMP U3 small nucleolar ribonucleoprotein 3.	0.985
BMS1	KRR1	ENSMMUP00000009744	ENSMMUP00000012611	BMS1 ribosome biogenesis factor.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.995
BMS1	NOL6	ENSMMUP00000009744	ENSMMUP00000000522	BMS1 ribosome biogenesis factor.	Nucleolar protein 6.	0.997
BMS1	NOP58	ENSMMUP00000009744	ENSMMUP00000041834	BMS1 ribosome biogenesis factor.	NOP58 ribonucleoprotein.	0.993
BMS1	RRP9	ENSMMUP00000009744	ENSMMUP00000004862	BMS1 ribosome biogenesis factor.	Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein.	0.989
BMS1	UTP11	ENSMMUP00000009744	ENSMMUP00000027419	BMS1 ribosome biogenesis factor.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.984
BMS1	UTP20	ENSMMUP00000009744	ENSMMUP00000065531	BMS1 ribosome biogenesis factor.	UTP20 small subunit processome component.	0.996
BMS1	WDR46	ENSMMUP00000009744	ENSMMUP00000033869	BMS1 ribosome biogenesis factor.	WD repeat domain 46.	0.995
EMG1	BMS1	ENSMMUP00000013348	ENSMMUP00000009744	Uncharacterized protein.	BMS1 ribosome biogenesis factor.	0.981
EMG1	FCF1	ENSMMUP00000013348	ENSMMUP00000011656	Uncharacterized protein.	rRNA-processing protein FCF1 homolog.	0.996
EMG1	IMP3	ENSMMUP00000013348	ENSMMUP00000021183	Uncharacterized protein.	IMP U3 small nucleolar ribonucleoprotein 3.	0.992
EMG1	KRR1	ENSMMUP00000013348	ENSMMUP00000012611	Uncharacterized protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.997
EMG1	NOL6	ENSMMUP00000013348	ENSMMUP00000000522	Uncharacterized protein.	Nucleolar protein 6.	0.996
EMG1	NOP58	ENSMMUP00000013348	ENSMMUP00000041834	Uncharacterized protein.	NOP58 ribonucleoprotein.	0.996
EMG1	RRP9	ENSMMUP00000013348	ENSMMUP00000004862	Uncharacterized protein.	Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein.	0.977
EMG1	UTP11	ENSMMUP00000013348	ENSMMUP00000027419	Uncharacterized protein.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.992
EMG1	UTP20	ENSMMUP00000013348	ENSMMUP00000065531	Uncharacterized protein.	UTP20 small subunit processome component.	0.991
EMG1	WDR46	ENSMMUP00000013348	ENSMMUP00000033869	Uncharacterized protein.	WD repeat domain 46.	0.991