Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LDB1LIM domain-binding protein 1 isoform 1. (411 aa)    
Predicted Functional Partners:
LMO2
Uncharacterized protein.
    
 0.987
TAL1
BHLH domain-containing protein.
    
 0.980
SSBP3
Single stranded DNA binding protein 3.
   
 
 0.963
ISL1
ISL LIM homeobox 1.
    
 0.959
SSBP4
Single stranded DNA binding protein 4.
   
 
 0.957
LHX6
LIM homeobox 6.
    
 0.949
LMX1B
LIM homeobox transcription factor 1-beta isoform 1.
    
 0.943
LHX9
LIM homeobox 9.
    
 0.942
LHX4
LIM homeobox 4.
    
 0.935
ISL2
ISL LIM homeobox 2.
    
 0.918
Your Current Organism:
Macaca mulatta
NCBI taxonomy Id: 9544
Other names: M. mulatta, Rhesus monkey, rhesus macaque, rhesus macaques, rhesus monkeys
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